Isolation:
Cell Isolation:
Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Article Title: Mechanistic Study of SRSF1-Mediated Inhibition of Treg Cell Function via the mTORC1/ULK1 Signalling Axis Through Mitophagy in Asthma.
Article Snippet: Objective: This study examines the role of serine/argininerich splicing factor 1 (SRSF1) in airway inflammation in asthma and the molecular mechanisms in mitophagy and metabolic homeostasis in regulatory T cells (Tregs).. Methods: Bronchoalveolar lavage fluid (BALF) was collected from asthma patients and healthy controls to assess SRSF1 expression and autophagy, and to analyse the correlation of SRSF1 with Treg cell functional markers and lung function.. The ovalbumin (OVA)induced asthma mouse model was established, with the OVA, OVA+shSRSF1, OVA+rapamycin, and OVA+shSRSF1+MHY1485 groups established.
Staining:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
FACS:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
BIA-KA:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Sensitivity:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Single Cell:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Real-time Polymerase Chain Reaction:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
SYBR Green Assay:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Metabolomic:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Sequencing:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Gene Knockout:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Bulk RNA Sequencing:Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article
Purification:
Centrifugation:Article Title: Mechanistic Study of SRSF1-Mediated Inhibition of Treg Cell Function via the mTORC1/ULK1 Signalling Axis Through Mitophagy in Asthma.
Article Snippet: Objective: This study examines the role of serine/argininerich splicing factor 1 (SRSF1) in airway inflammation in asthma and the molecular mechanisms in mitophagy and metabolic homeostasis in regulatory T cells (Tregs).. Methods: Bronchoalveolar lavage fluid (BALF) was collected from asthma patients and healthy controls to assess SRSF1 expression and autophagy, and to analyse the correlation of SRSF1 with Treg cell functional markers and lung function.. The ovalbumin (OVA)induced asthma mouse model was established, with the OVA, OVA+shSRSF1, OVA+rapamycin, and OVA+shSRSF1+MHY1485 groups established.
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