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cd4 t cell kit  (Miltenyi Biotec)


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  • 97

    Structured Review

    Miltenyi Biotec cd4 t cell kit
    (A) Representative dot plots of isolated peripheral blood mononuclear cells (PBMCs) before (upper row) and after (lower row) total <t>CD4</t> + cells magnetic‐activated cell sorting (MACS) from a young donor. Cells are gated on the living population and checked for CD4 vs. CD8 (left panels), CD45RA vs. CD28 expression (middle panels), and for CD127 vs. CD25 (right panels) expression. Frequencies of CD4 + Foxp3 + (B) and CD25 + of CD4 + Foxp3 + (C) cells are shown after 4 days of in vitro induction of Treg cells in the presence of 10% fetal calf serum (FCS) containing medium RPMI or in serum‐free medium XVivo‐15 (MEAN; n = 2, young donors).
    Cd4 T Cell Kit, supplied by Miltenyi Biotec, used in various techniques. Bioz Stars score: 97/100, based on 488 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cd4+kit/CD4%2B+T+Cell+Isolation+Kit%2C+human/pmc13636363-41-14-12
    Average 97 stars, based on 488 article reviews
    cd4 t cell kit - by Bioz Stars, 2026-10
    97/100 stars

    Images

    1) Product Images from "In vitro generation of regulatory T cells: A challenging tool for studying immune aging in humans"

    Article Title: In vitro generation of regulatory T cells: A challenging tool for studying immune aging in humans

    Journal: FEBS Open Bio

    doi: 10.1002/2211-5463.70349

    (A) Representative dot plots of isolated peripheral blood mononuclear cells (PBMCs) before (upper row) and after (lower row) total CD4 + cells magnetic‐activated cell sorting (MACS) from a young donor. Cells are gated on the living population and checked for CD4 vs. CD8 (left panels), CD45RA vs. CD28 expression (middle panels), and for CD127 vs. CD25 (right panels) expression. Frequencies of CD4 + Foxp3 + (B) and CD25 + of CD4 + Foxp3 + (C) cells are shown after 4 days of in vitro induction of Treg cells in the presence of 10% fetal calf serum (FCS) containing medium RPMI or in serum‐free medium XVivo‐15 (MEAN; n = 2, young donors).
    Figure Legend Snippet: (A) Representative dot plots of isolated peripheral blood mononuclear cells (PBMCs) before (upper row) and after (lower row) total CD4 + cells magnetic‐activated cell sorting (MACS) from a young donor. Cells are gated on the living population and checked for CD4 vs. CD8 (left panels), CD45RA vs. CD28 expression (middle panels), and for CD127 vs. CD25 (right panels) expression. Frequencies of CD4 + Foxp3 + (B) and CD25 + of CD4 + Foxp3 + (C) cells are shown after 4 days of in vitro induction of Treg cells in the presence of 10% fetal calf serum (FCS) containing medium RPMI or in serum‐free medium XVivo‐15 (MEAN; n = 2, young donors).

    Techniques Used: Isolation, FACS, Expressing, In Vitro

    Frequency of Foxp3 + CD4 + cells (A) and CD25 expression in Foxp3 + cells (B) after 6 days of induction in TCR‐stimulated cells in the presence of IL‐2 (iTreg IL‐2 ) only or IL‐2 + TGF‐β (iTreg TGFβ ) in young and older individuals. (Mean ± SEM; n ≥ 3). Statistical significance P < 0.05*, and P < 0.01** (two‐way ANOVA with Sidak's post hoc test).
    Figure Legend Snippet: Frequency of Foxp3 + CD4 + cells (A) and CD25 expression in Foxp3 + cells (B) after 6 days of induction in TCR‐stimulated cells in the presence of IL‐2 (iTreg IL‐2 ) only or IL‐2 + TGF‐β (iTreg TGFβ ) in young and older individuals. (Mean ± SEM; n ≥ 3). Statistical significance P < 0.05*, and P < 0.01** (two‐way ANOVA with Sidak's post hoc test).

    Techniques Used: Expressing

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    Isolation:

    Article Title: A fully human afucosylated anti-GARP antibody PBA-0111 drives anti-tumor immunity through combined ADCC induction and TGF-β1 pathway blockade
    Article Snippet: .. Regulatory T cells were isolated from PBMCs from the same donor as NK cells by immunomagnetic two-step procedure with human CD4 + CD25 + Regulatory T Cell Isolation Kit (Miltenyi Biotec, 130-091-301) according to the manufacturer’s protocol. .. Treg were activated using Dynabeads Human T-Activator CD3/CD28 for T Cell Expansion and Activation (Gibco, 11161D) for two days.

    Cell Isolation:

    Article Title: A fully human afucosylated anti-GARP antibody PBA-0111 drives anti-tumor immunity through combined ADCC induction and TGF-β1 pathway blockade
    Article Snippet: .. Regulatory T cells were isolated from PBMCs from the same donor as NK cells by immunomagnetic two-step procedure with human CD4 + CD25 + Regulatory T Cell Isolation Kit (Miltenyi Biotec, 130-091-301) according to the manufacturer’s protocol. .. Treg were activated using Dynabeads Human T-Activator CD3/CD28 for T Cell Expansion and Activation (Gibco, 11161D) for two days.

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Article Title: Mechanistic Study of SRSF1-Mediated Inhibition of Treg Cell Function via the mTORC1/ULK1 Signalling Axis Through Mitophagy in Asthma.
    Article Snippet: Objective: This study examines the role of serine/argininerich splicing factor 1 (SRSF1) in airway inflammation in asthma and the molecular mechanisms in mitophagy and metabolic homeostasis in regulatory T cells (Tregs).. Methods: Bronchoalveolar lavage fluid (BALF) was collected from asthma patients and healthy controls to assess SRSF1 expression and autophagy, and to analyse the correlation of SRSF1 with Treg cell functional markers and lung function.. The ovalbumin (OVA)induced asthma mouse model was established, with the OVA, OVA+shSRSF1, OVA+rapamycin, and OVA+shSRSF1+MHY1485 groups established.

    Staining:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    FACS:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    BIA-KA:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Sensitivity:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Single Cell:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Real-time Polymerase Chain Reaction:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    SYBR Green Assay:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Metabolomic:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Sequencing:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Gene Knockout:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Bulk RNA Sequencing:

    Article Title: Gut microbiota primes stroke severity via the AHR in intestinal dendritic cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Kovács reagent Merck Catalog# 60983-100ML Lipopolysaccharides from Escherichia coli O111:B4 (LPS) Sigma Aldrich Catalog# L2630-10MG DAPI (4′,6-diamidino-2-phenylindole) ThermoFisher Scientific Cat# D3571 Tissue-Tek O.C.T. .. Compound Sakura Finetek #4583 Critical commercial assays Pan Dendritic Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-100-875 CD11c MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-125-835 Anti-F4/80 MicroBeads UltraPure, mouse Miltenyi Biotec Catalog# 130-110-443 CD45 MicroBeads, mouse Miltenyi Biotec Catalog# 130-052-301 Naive CD4+ T Cell Isolation Kit, mouse Miltenyi Biotec Catalog# 130-104-453 T cell Enrichment Kit, mouse Invitrogen Catalog# 8804-6820-74 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Invitrogen Catalog# L34966 Foxp3 / Transcription Factor Staining Buffer Set eBioscience Catalog# 00-5523-00 Zombie NIR Fixable Viability Kit Biolegend Catalog# 423106 CellTrace CFSE Cell Proliferation Kit Invitrogen Catalog# C34570 Dneasy PowerLyzer PowerSoil Kit QIAGEN Catalog# 12855-50 FACS Research CS&T Beads BDBioscience Catalog# 650622 Pierce BCA Protein Assay Kits Thermo Fisher Catalog# 23227 Indican Assay Kit Merck Catalog# MAK128-1KT Agilent High Sensitivity DNA kit Agilent Catalog# 5067-4626 3′ Feature Barcode Kit, 16 rxns 10x Genomics Catalog# 1000262 Chromium Next GEM Chip G Single Cell Kit 10x Genomics Catalog# 1000127 Chromium Next GEM Single Cell 3′ Kit v3.1, 4 rxns 10x Genomics Catalog# 1000269 PicoPure RNA-Isolation Kit Thermo Fisher Catalog# KIT0204 Dual Index Kit TT, Set A 10x Genomics Catalog# 1000215 Luna Universal qPCR Master Mix New England Biolabs Catalog# M3003L QuantiNova SYBR Green Master Mix Qiagen Catalog# 208052 Deposited data Metabolomic peak intensities This paper MetaboLights: MTBLS10296 Raw 16S rRNA sequencing data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Mouse) This paper ENA: PRJEB76125 Raw metagenomic data (Human) Available upon request ENA: PRJEB112493 Raw scRNAseq data (CD11c+ cells) This paper GEO: GSE242793 (WT) and GEO: GSE335318 (KO) Raw scRNAseq data (CD45+ cells) This paper GEO: GSE333893 Bulk RNA sequencing human PBMCs Available upon request GEO: GSE331113 Experimental models: Organisms/strains Mouse: C57BL/6J Charles River Strain #:000664 Mouse: KikGR (Tg(CAG-KikGR)33Hadj) Weill Cornell Medical College, New York, USA, Dr. Anrather MGI:J:153627 Mouse: Ahrfl/flItgaxcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 Cd11c-Cre: #008068 Mouse: Ahrfl/flILysMcr+/cr- University Medical Center Hamburg- Eppendorf, Hamburg, Germany, Dr. Herkel and Dr. Carambia Ahrfx: #006203 LysMcre: #004781 (Continued on next page) ll OPEN ACCESS e4 Cell 189, 1–20.e1–e18, December 24, 2026 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse: DEREG mice Institute for Stroke and Dementia Research, Munich, Germany, Dr. Korn MMRRC Strain #032050-JAX Mouse: C57BL/6-Ahrem1Stck/J (Ahr-TdTomato) The Jackson Laboratory Strain #:038111 Mouse: Rag1–/– The Jackson Laboratory Strain #:002216 Oligonucleotides Ahr: Forward: 5′ GCCCTTCCCGCAAGATGTTAT 3′ Reverse: 5′ GCTGACGCTGAGCCTAAGAAC 3′ Metabion N/A Ahrr (Aryl hydrocarbon receptor repressor): Forward: 5′ CTGCCCAGGTACTCTGAACC 3′ Reverse: 5′ ACTGTCCACAAAGCCTGACC 3′ Metabion N/A Cyp1a1 (Cytochrome P450 family 1 subfamily A polypeptide 1): Forward: 5′ CGTTATGACCATGATGACCAAGA 3′ Reverse 5′ TCCCCAAACTCATTGCTCAGAT 3′ Metabion N/A Cyp1b1 (Cytochrome P450 family 1 subfamily B polypeptide 1): Forward: 5′ CCAGATCCCGCTGCTCTACA 3′ Reverse: 5′ TGGACTGTCTGCACTAAGGCTG 3′ Metabion N/A Tiparp (TCDD-inducible poly-ADP-ribose polymerase): Forward: 5′ CCAATGATTCTCAGGAGCACTTG 3′ Reverse: 5′ GTAGACAGCCTTCGTAGTTGGTC 3′ Metabion N/A 18S: Forward: 5′ AGAAACGGCTACCACATCCAA 3′ Reverse: 5′ CCTGTATTGTTATTTTTCGTCACTACCT 3′ Metabion N/A Escherichia Coli: Forward: 5′ CATGCCGCGTGTATGAAGAA 3′ Reverse: 5′ CGGGTAACGTCAATGAGCAAA 3′ Metabion N/A tnaA: Forward: 5′ CTTTAAACATCTCCCTGAACCGTTC 3′ Reverse: 5′ GGCCTAACAGGAAAGAGCCA 3′ Metabion N/A 16S: Forward: 5′ ACTCCTRCGGGAGGCAGCAG 3′ Reverse: 5′ GGACTACCVGGGTATCTAAT 3′ Metabion N/A Ahr (genotyping): Forward: 5′ GGTACAAGTGCACATGCCTGC 3′ Reverse: 5′ CAGTGGGAATAAGGCAAGAGTGA 3′ Metabion N/A Itgax-Cre (genotyping): Forward (Itgax): 5′ GCTTCTTCTGTGGTGACTTG 3′ Reverse (Cre): 5′ GCGAACATCTTCAGGTTCTG 3′ Metabion N/A KikGR33 (genotyping): Forward: 5′ GAAGATCGAGCTGCGTATGGA Reverse: 5′ ACCCTTCAGCACTCCATCACG Metabion N/A DEREG (genotyping): Forward (Transgene): 5′ CCCAGGTTA CCATGGAGAGA Reverse (Mutant oIMR9402): 5′ GAAC TTCAGGGTCAGCTTGC Forward: (wild-type oIMR8744): 5′ CAA ATGTTGCTTGTCTGGTG Reverse (wild-type oIMR8745): 5′ GTCA GTCGAGTGCACAGTTT Metabion N/A (Continued on next page) ll OPEN ACCESS Cell 189, 1–20.e1–e18, December 24, 2026 e5 Article

    Purification:

    Article Title: In vitro generation of regulatory T cells: A challenging tool for studying immune aging in humans
    Article Snippet: .. For the purification of total CD4 + T cells, we used the Miltenyi Biotec CD4 T‐cell Kit (130‐096‐533) according to the manufacturer's protocol. .. Following MACS sorting, the cells were resuspended in medium (RPMI‐1640 or Lonza X‐Vivo 15) depending on the experimental protocol.

    Centrifugation:

    Article Title: Mechanistic Study of SRSF1-Mediated Inhibition of Treg Cell Function via the mTORC1/ULK1 Signalling Axis Through Mitophagy in Asthma.
    Article Snippet: Objective: This study examines the role of serine/argininerich splicing factor 1 (SRSF1) in airway inflammation in asthma and the molecular mechanisms in mitophagy and metabolic homeostasis in regulatory T cells (Tregs).. Methods: Bronchoalveolar lavage fluid (BALF) was collected from asthma patients and healthy controls to assess SRSF1 expression and autophagy, and to analyse the correlation of SRSF1 with Treg cell functional markers and lung function.. The ovalbumin (OVA)induced asthma mouse model was established, with the OVA, OVA+shSRSF1, OVA+rapamycin, and OVA+shSRSF1+MHY1485 groups established.



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    Image Search Results


    (A) Representative dot plots of isolated peripheral blood mononuclear cells (PBMCs) before (upper row) and after (lower row) total CD4 + cells magnetic‐activated cell sorting (MACS) from a young donor. Cells are gated on the living population and checked for CD4 vs. CD8 (left panels), CD45RA vs. CD28 expression (middle panels), and for CD127 vs. CD25 (right panels) expression. Frequencies of CD4 + Foxp3 + (B) and CD25 + of CD4 + Foxp3 + (C) cells are shown after 4 days of in vitro induction of Treg cells in the presence of 10% fetal calf serum (FCS) containing medium RPMI or in serum‐free medium XVivo‐15 (MEAN; n = 2, young donors).

    Journal: FEBS Open Bio

    Article Title: In vitro generation of regulatory T cells: A challenging tool for studying immune aging in humans

    doi: 10.1002/2211-5463.70349

    Figure Lengend Snippet: (A) Representative dot plots of isolated peripheral blood mononuclear cells (PBMCs) before (upper row) and after (lower row) total CD4 + cells magnetic‐activated cell sorting (MACS) from a young donor. Cells are gated on the living population and checked for CD4 vs. CD8 (left panels), CD45RA vs. CD28 expression (middle panels), and for CD127 vs. CD25 (right panels) expression. Frequencies of CD4 + Foxp3 + (B) and CD25 + of CD4 + Foxp3 + (C) cells are shown after 4 days of in vitro induction of Treg cells in the presence of 10% fetal calf serum (FCS) containing medium RPMI or in serum‐free medium XVivo‐15 (MEAN; n = 2, young donors).

    Article Snippet: For the purification of total CD4 + T cells, we used the Miltenyi Biotec CD4 T‐cell Kit (130‐096‐533) according to the manufacturer's protocol.

    Techniques: Isolation, FACS, Expressing, In Vitro

    Frequency of Foxp3 + CD4 + cells (A) and CD25 expression in Foxp3 + cells (B) after 6 days of induction in TCR‐stimulated cells in the presence of IL‐2 (iTreg IL‐2 ) only or IL‐2 + TGF‐β (iTreg TGFβ ) in young and older individuals. (Mean ± SEM; n ≥ 3). Statistical significance P < 0.05*, and P < 0.01** (two‐way ANOVA with Sidak's post hoc test).

    Journal: FEBS Open Bio

    Article Title: In vitro generation of regulatory T cells: A challenging tool for studying immune aging in humans

    doi: 10.1002/2211-5463.70349

    Figure Lengend Snippet: Frequency of Foxp3 + CD4 + cells (A) and CD25 expression in Foxp3 + cells (B) after 6 days of induction in TCR‐stimulated cells in the presence of IL‐2 (iTreg IL‐2 ) only or IL‐2 + TGF‐β (iTreg TGFβ ) in young and older individuals. (Mean ± SEM; n ≥ 3). Statistical significance P < 0.05*, and P < 0.01** (two‐way ANOVA with Sidak's post hoc test).

    Article Snippet: For the purification of total CD4 + T cells, we used the Miltenyi Biotec CD4 T‐cell Kit (130‐096‐533) according to the manufacturer's protocol.

    Techniques: Expressing

    PBA-0111 demonstrates potent ADCC against GARP and GARP/TGF-β1 positive tumor cells and Tregs, accompanied by NK cell activation. (A) Raji-GARP target cells were treated with serial dilutions (0.00001-100 nM) of PBA-0111, DS-1055a-like antibody, or afucosylated isotype control and subjected to NK cell-mediated lysis for 4 h at 37 °C at an Effector: Target ratio of 10:1. Cell killing was analyzed by flow cytometry using live/dead stain. Data are shown as mean ± SD from a representative pool of three independent donors tested in duplicate. (B) ADCC was performed against Raji-GARP/TGF-β1 target cells (n=6, from 3 independent donors) using the same conditions as in (A) . (C) ADCC against the L-428 lymphoma cell line (n=6, from 3 independent donors). (D) ADCC against in vitro differentiated Tregs. CD4+CD25high T cells isolated from healthy donor PBMCs were stimulated with anti-CD3/CD28 beads to generate regulatory T cells, then subjected to autologous NK-mediated cellular lysis overnight at 37 °C in the presence of indicated anti-GARP antibodies. Data represent pooled results from three independent donors tested in duplicate, mean ± SD. (E) PBMCs (n=3 donors, in 2 replicates) were co-incubated with Raji-GARP/TGF-β1 cells and either PBA-0111, DS-1055a-like antibody, or afucosylated isotype control (IgG.aF) at 5 nM for 4 hours. NK cells were then analyzed by flow cytometry for CD107a expression in the presence of Golgi stop. (F) The same NK cells were analyzed for IFN-γ and (G) TNF-α production. Data are expressed as fold change relative to the afucosylated isotype control. Statistical significance versus IgG1.aF was assessed by Kruskal-Wallis with Dunn´s multiple comparison, *p< 0.05, **p< 0.01, ***p< 0.001.

    Journal: Frontiers in Immunology

    Article Title: A fully human afucosylated anti-GARP antibody PBA-0111 drives anti-tumor immunity through combined ADCC induction and TGF-β1 pathway blockade

    doi: 10.3389/fimmu.2026.1921265

    Figure Lengend Snippet: PBA-0111 demonstrates potent ADCC against GARP and GARP/TGF-β1 positive tumor cells and Tregs, accompanied by NK cell activation. (A) Raji-GARP target cells were treated with serial dilutions (0.00001-100 nM) of PBA-0111, DS-1055a-like antibody, or afucosylated isotype control and subjected to NK cell-mediated lysis for 4 h at 37 °C at an Effector: Target ratio of 10:1. Cell killing was analyzed by flow cytometry using live/dead stain. Data are shown as mean ± SD from a representative pool of three independent donors tested in duplicate. (B) ADCC was performed against Raji-GARP/TGF-β1 target cells (n=6, from 3 independent donors) using the same conditions as in (A) . (C) ADCC against the L-428 lymphoma cell line (n=6, from 3 independent donors). (D) ADCC against in vitro differentiated Tregs. CD4+CD25high T cells isolated from healthy donor PBMCs were stimulated with anti-CD3/CD28 beads to generate regulatory T cells, then subjected to autologous NK-mediated cellular lysis overnight at 37 °C in the presence of indicated anti-GARP antibodies. Data represent pooled results from three independent donors tested in duplicate, mean ± SD. (E) PBMCs (n=3 donors, in 2 replicates) were co-incubated with Raji-GARP/TGF-β1 cells and either PBA-0111, DS-1055a-like antibody, or afucosylated isotype control (IgG.aF) at 5 nM for 4 hours. NK cells were then analyzed by flow cytometry for CD107a expression in the presence of Golgi stop. (F) The same NK cells were analyzed for IFN-γ and (G) TNF-α production. Data are expressed as fold change relative to the afucosylated isotype control. Statistical significance versus IgG1.aF was assessed by Kruskal-Wallis with Dunn´s multiple comparison, *p< 0.05, **p< 0.01, ***p< 0.001.

    Article Snippet: Regulatory T cells were isolated from PBMCs from the same donor as NK cells by immunomagnetic two-step procedure with human CD4 + CD25 + Regulatory T Cell Isolation Kit (Miltenyi Biotec, 130-091-301) according to the manufacturer’s protocol.

    Techniques: Activation Assay, Control, Lysis, Flow Cytometry, Staining, In Vitro, Isolation, Incubation, Expressing, Comparison

    PBA-0111 activates T cells leading to anti-tumor efficacy. (A–D) CD34 + HSC humanized NSG-hIL15 mice (n=6-7/group) were inoculated subcutaneously with Raji-GARP/TGF-β1 and treated with vehicle or six doses of PBA-0111 or DS-1055a-like antibody at 10 mg/kg twice weekly, initiated when the tumor volumes reached 80-150 mm 3 . At study termination, tumors, spleens and terminal blood were collected and processed for FACS analysis. (A) Proportion of CD8 + cells within the tumor (B) Intratumoral CD8 + /Treg ratio. (C) Activation status of intratumoral CD8 + T cells. (D) NK cell activation in peripheral blood. (E–I) CD34 + HSC humanized NCG-hIL15 mice (n=8/group) were inoculated subcutaneously with HT-29 colon carcinoma cells and treated as above. At study termination, tumors and terminal blood were processed for FACS analysis (n=4-8/group). (E) Proportion of intratumoral CD8 + T cells. (F) Intratumoral CD8+/Treg ratio. (G) CD8 + T cell infiltration confirmed by immunohistochemistry (IHC). (H) Granzyme B expression detected by IHC. (I) Representative IHC images showing CD8 + (green) and Granzyme B + (magenta) cells in immune-positive clusters at the tumor periphery (rim) of HT-29 tumors. Scale bar = 100 µm. Statistical significance was assessed by Kruskal-Wallis test with Dunn´s multiple comparisons. **p < 0.01.

    Journal: Frontiers in Immunology

    Article Title: A fully human afucosylated anti-GARP antibody PBA-0111 drives anti-tumor immunity through combined ADCC induction and TGF-β1 pathway blockade

    doi: 10.3389/fimmu.2026.1921265

    Figure Lengend Snippet: PBA-0111 activates T cells leading to anti-tumor efficacy. (A–D) CD34 + HSC humanized NSG-hIL15 mice (n=6-7/group) were inoculated subcutaneously with Raji-GARP/TGF-β1 and treated with vehicle or six doses of PBA-0111 or DS-1055a-like antibody at 10 mg/kg twice weekly, initiated when the tumor volumes reached 80-150 mm 3 . At study termination, tumors, spleens and terminal blood were collected and processed for FACS analysis. (A) Proportion of CD8 + cells within the tumor (B) Intratumoral CD8 + /Treg ratio. (C) Activation status of intratumoral CD8 + T cells. (D) NK cell activation in peripheral blood. (E–I) CD34 + HSC humanized NCG-hIL15 mice (n=8/group) were inoculated subcutaneously with HT-29 colon carcinoma cells and treated as above. At study termination, tumors and terminal blood were processed for FACS analysis (n=4-8/group). (E) Proportion of intratumoral CD8 + T cells. (F) Intratumoral CD8+/Treg ratio. (G) CD8 + T cell infiltration confirmed by immunohistochemistry (IHC). (H) Granzyme B expression detected by IHC. (I) Representative IHC images showing CD8 + (green) and Granzyme B + (magenta) cells in immune-positive clusters at the tumor periphery (rim) of HT-29 tumors. Scale bar = 100 µm. Statistical significance was assessed by Kruskal-Wallis test with Dunn´s multiple comparisons. **p < 0.01.

    Article Snippet: Regulatory T cells were isolated from PBMCs from the same donor as NK cells by immunomagnetic two-step procedure with human CD4 + CD25 + Regulatory T Cell Isolation Kit (Miltenyi Biotec, 130-091-301) according to the manufacturer’s protocol.

    Techniques: Analysis, Activation Assay, Immunohistochemistry, Expressing

    PBA-0111 shows signs of T cell activation in soft tissue sarcoma patients following intratumoral administration. (A) CIVO workflow. PBA-0111 was co-formulated with fluorescent microspheres and loaded into the CIVO injector, which delivers eight individual columns of drug directly into the patient tumor (left). STS patients receiving the multiplexed microinjection were evaluated immediately following the procedure by visualization of individual injection sites using a blue light and yellow filter that illuminates the CIVO GLO fluorescent microspheres with an ultraviolet flashlight (center). Following a pre-scheduled surgical resection 2-96 hours later, the tumors were sectioned transverse to the drug columns, yielding 2-4 sections of FFPE tissue for downstream IHC and ISH staining and image analysis. (B) GARP expression assessed by ISH. Representative injection site images from vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of GARP + cells across all evaluable injection sites in all patients (n=6). (C) Regulatory T cell infiltration assessed by IHC. Representative injection site images for vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of CD4+ T cells that are FoxP3 + across all evaluable injection sites in all patients. (D) . CD8 + cytotoxic T cell activity assessed by IHC. Representative injection site images for vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of CD8 + T cells that are Granzyme B + across all evaluable injection sites in all patients.

    Journal: Frontiers in Immunology

    Article Title: A fully human afucosylated anti-GARP antibody PBA-0111 drives anti-tumor immunity through combined ADCC induction and TGF-β1 pathway blockade

    doi: 10.3389/fimmu.2026.1921265

    Figure Lengend Snippet: PBA-0111 shows signs of T cell activation in soft tissue sarcoma patients following intratumoral administration. (A) CIVO workflow. PBA-0111 was co-formulated with fluorescent microspheres and loaded into the CIVO injector, which delivers eight individual columns of drug directly into the patient tumor (left). STS patients receiving the multiplexed microinjection were evaluated immediately following the procedure by visualization of individual injection sites using a blue light and yellow filter that illuminates the CIVO GLO fluorescent microspheres with an ultraviolet flashlight (center). Following a pre-scheduled surgical resection 2-96 hours later, the tumors were sectioned transverse to the drug columns, yielding 2-4 sections of FFPE tissue for downstream IHC and ISH staining and image analysis. (B) GARP expression assessed by ISH. Representative injection site images from vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of GARP + cells across all evaluable injection sites in all patients (n=6). (C) Regulatory T cell infiltration assessed by IHC. Representative injection site images for vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of CD4+ T cells that are FoxP3 + across all evaluable injection sites in all patients. (D) . CD8 + cytotoxic T cell activity assessed by IHC. Representative injection site images for vehicle and PBA-0111-treated sites in Patient 5, with summary data showing the median percentage of CD8 + T cells that are Granzyme B + across all evaluable injection sites in all patients.

    Article Snippet: Regulatory T cells were isolated from PBMCs from the same donor as NK cells by immunomagnetic two-step procedure with human CD4 + CD25 + Regulatory T Cell Isolation Kit (Miltenyi Biotec, 130-091-301) according to the manufacturer’s protocol.

    Techniques: Activation Assay, Tissue, Microinjection, Injection, Staining, Analysis, Expressing, Activity Assay